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2.
J Biol Inorg Chem ; 2024 Jan 16.
Artigo em Inglês | MEDLINE | ID: mdl-38227199

RESUMO

Hyperthermophilic ('superheat-loving') archaea found in high-temperature environments such as Pyrobaculum aerophilum contain multicopper oxidases (MCOs) with remarkable efficiency for oxidizing cuprous and ferrous ions. In this work, directed evolution was used to expand the substrate specificity of P. aerophilum McoP for organic substrates. Six rounds of error-prone PCR and DNA shuffling followed by high-throughput screening lead to the identification of a hit variant with a 220-fold increased efficiency (kcat/Km) than the wild-type for 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) (ABTS) without compromising its intrinsic activity for metal ions. The analysis of the X-ray crystal structure reveals four proximal mutations close to the T1Cu active site. One of these mutations is within the 23-residues loop that occludes this site, a distinctive feature of prokaryotic MCOs. The increased flexibility of this loop results in an enlarged tunnel and one additional pocket that facilitates bulky substrate-enzyme interactions. These findings underscore the synergy between mutations that modulate the dynamics of the active-site loop enabling enhanced catalytic function. This study highlights the potential of targeting loops close to the T1Cu for engineering improvements suitable for biotechnological applications.

3.
Nat Commun ; 14(1): 7289, 2023 11 14.
Artigo em Inglês | MEDLINE | ID: mdl-37963862

RESUMO

C-glycosides are natural products with important biological activities but are recalcitrant to degradation. Glycoside 3-oxidases (G3Oxs) are recently identified bacterial flavo-oxidases from the glucose-methanol-coline (GMC) superfamily that catalyze the oxidation of C-glycosides with the concomitant reduction of O2 to H2O2. This oxidation is followed by C-C acid/base-assisted bond cleavage in two-step C-deglycosylation pathways. Soil and gut microorganisms have different oxidative enzymes, but the details of their catalytic mechanisms are largely unknown. Here, we report that PsG3Ox oxidizes at 50,000-fold higher specificity (kcat/Km) the glucose moiety of mangiferin to 3-keto-mangiferin than free D-glucose to 2-keto-glucose. Analysis of PsG3Ox X-ray crystal structures and PsG3Ox in complex with glucose and mangiferin, combined with mutagenesis and molecular dynamics simulations, reveal distinctive features in the topology surrounding the active site that favor catalytically competent conformational states suitable for recognition, stabilization, and oxidation of the glucose moiety of mangiferin. Furthermore, their distinction to pyranose 2-oxidases (P2Oxs) involved in wood decay and recycling is discussed from an evolutionary, structural, and functional viewpoint.


Assuntos
Glicosídeos Cardíacos , Oxirredutases , Oxirredutases/metabolismo , Peróxido de Hidrogênio , Glicosídeos/metabolismo , Glucose/metabolismo , Especificidade por Substrato , Glicosídeo Hidrolases/metabolismo
4.
CuidArte, Enferm ; 17(1): 76-82, jan.-jun. 2023. tab
Artigo em Português | BDENF - Enfermagem | ID: biblio-1511911

RESUMO

Introdução: Entre os tratamentos atuais para controle de arritmias, os mais comuns são os dispositivos cardíacos eletrônicos implantáveis, capazes de controlar o ritmo do coração por meio de diferentes terapias, de acordo com as necessidades do paciente. Embora proporcionem maior longevidade às pessoas, a dependência de um dispositivo biomecânico geralmente exige mudança no estilo de vida do portador. Objetivos: Caracterizar o perfil sociográfico e clínico dos pacientes com dispositivos cardíacos eletrônicos implantáveis e identificar o conhecimento adquirido após intervenção educativa do enfermeiro. Material e Métodos: Pesquisa transversal, quantitativa, descritiva, com correlação entre as variáveis. Participaram 30 portadores de dispositivos, por meio de intervenção educativa do enfermeiro e uso de um folheto ilustrativo sobre cuidados pós-implante, disponibilizado ao paciente. Em seguida, foi realizada entrevista estruturada com questões referentes às orientações feitas sobre os cuidados. Resultados: A maioria dos participantes acertou todas as respostas sobre as recomendações de cuidados pós-operatórios de forma imediata. Quanto às orientações referentes ao tempo de repouso para voltar às atividades cotidianas, 28 (93,3%) acertaram; como proceder diante de detectores de metal 25 (83,3%) acertaram e sobre o uso de colchão magnético, 25 (83,3%) acertaram, demonstrando que estes conhecimentos precisam de maior esclarecimento. Conclusão: A intervenção educativa e o uso de folheto ilustrativo sobre cuidados pós-implante de dispositivos cardíacos implantáveis facilitou a explicação e propiciou a assimilação do conhecimento, sendo um recurso importante para o enfermeiro que atua na área cardiológica


Introduction: Among the current treatments for arrhythmias control, the most common are implantable electronic cardiac devices, capable of controlling the heart rhythm through different therapies, according to the needs of the patient. Although they provide greater longevity to people, dependence on a biomechanical device usually requires a change in the lifestyle of the carrier. Objectives: To characterize the sociographic and clinical profile of patients with implantable electronic cardiac devices and to identify the knowledge acquired after nurses' educational intervention. Material and Methods: Cross-sectional, quantitative, descriptive research, with correlation between variables. Thirty patients with devices participated, through the nurse's educational intervention and the use of an illustrative leaflet on post-implant care, made available to the patient. Then, a structured interview was conducted with questions regarding the guidelines made about care. Results: The majority of the participants answered all the recommendations for postoperative care immediately. Regarding the guidelines regarding rest time to return to daily activities, 28 (93.3%) agreed; how to proceed before metal detectors 25 (83.3%) agreed and on the use of magnetic mattress, 25 (83.3%) proved that this knowledge needs further clarification. Conclusion: The educational intervention and the use of illustrative leaflet on post-implantation care of implantable cardiac devices facilitated the explanation and provided the assimilation of knowledge, being an important resource for the nurse who works in the cardiological area


Introducción: Entre los tratamientos actuales para el control de la arritmia, los más comunes son los dispositivos cardíacos electrónicos implantables, capaces de controlar el ritmo cardíaco a través de diferentes terapias, según las necesidades del paciente. Si bien brindan a las personas una mayor longevidad, la dependencia de un dispositivo biomecánico suele requerir un cambio en el estilo de vida del usuario. Objetivos: Caracterizar el perfil sociográfico y clínico de pacientes portadores de dispositivos cardíacos electrónicos implantables e identificar los conocimientos adquiridos después de una intervención educativa por parte de enfermeros. Material y Métodos: Investigación transversal, cuantitativa, descriptiva, con correlación entre variables. Participaron 30 portadores de dispositivos, a través de una intervención educativa por parte de enfermeras y el uso de un tríptico ilustrativo sobre los cuidados post-implante, a disposición del paciente. Luego, se realizó una entrevista estructurada con preguntas sobre las pautas dadas sobre el cuidado. Resultados: La mayoría de los participantes acertaron en todas las recomendaciones de cuidados postoperatorios inmediatos. En cuanto a las orientaciones sobre el tiempo de descanso para la reincorporación a las actividades cotidianas, 28 (93,3%) fueron correctas; cómo proceder frente a los detectores de metales 25 (83,3%) fueron correctos y sobre el uso de un colchón magnético, 25 (83,3%) fueron correctos, lo que demuestra que este conocimiento necesita mayor aclaración. Conclusión: La intervención educativa y el uso de un tríptico ilustrativo sobre cuidados post-implante de dispositivos cardíacos implantables facilitó la explicación y facilitó la asimilación de conocimientos, siendo un recurso importante para los enfermeros que actúan en el área de cardiología


Assuntos
Humanos , Masculino , Feminino , Adulto , Pessoa de Meia-Idade , Idoso , Idoso de 80 Anos ou mais , Marca-Passo Artificial , Conhecimentos, Atitudes e Prática em Saúde , Educação de Pacientes como Assunto/métodos , Desfibriladores Implantáveis , Estudos Transversais
5.
Biotechnol Adv ; 65: 108153, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37044267

RESUMO

Dye-decolorizing Peroxidases (DyPs) are heme-containing enzymes in fungi and bacteria that catalyze the reduction of hydrogen peroxide to water with concomitant oxidation of various substrates, including anthraquinone dyes, lignin-related phenolic and non-phenolic compounds, and metal ions. Investigation of DyPs has shed new light on peroxidases, one of the most extensively studied families of oxidoreductases; still, details of their microbial physiological role and catalytic mechanisms remain to be fully disclosed. They display a distinctive ferredoxin-like fold encompassing anti-parallel ß-sheets and α-helices, and long conserved loops surround the heme pocket with a role in catalysis and stability. A tunnel routes H2O2 to the heme pocket, whereas binding sites for the reducing substrates are in cavities near the heme or close to distal aromatic residues at the surface. Variations in reactions, the role of catalytic residues, and mechanisms were observed among different classes of DyP. They were hypothetically related to the presence or absence of distal H2O molecules in the heme pocket. The engineering of DyPs for improved properties directed their biotechnological applications, primarily centered on treating textile effluents and degradation of other hazardous pollutants, to fields such as biosensors and valorization of lignin, the most abundant renewable aromatic polymer. In this review, we track recent research contributions that furthered our understanding of the activity, stability, and structural properties of DyPs and their biotechnological applications. Overall, the study of DyP-type peroxidases has significant implications for environmental sustainability and the development of new bio-based products and materials with improved end-of-life options via biodegradation and chemical recyclability, fostering the transition to a sustainable bio-based industry in the circular economy realm.


Assuntos
Lignina , Peroxidases , Peroxidases/química , Biocatálise , Lignina/química , Peróxido de Hidrogênio , Heme/química , Corantes/química , Corantes/metabolismo
6.
Artigo em Inglês | MEDLINE | ID: mdl-36981833

RESUMO

Human skin wounds pose a gathering threat to the public health, carrying an immense epidemiologic and financial burden. Pharmacological and non-pharmacological (NP) treatments have been proposed to the management of wound healing. Physical exercise is a strong NP intervention considered for patients in wound healing. Particularly, a type of exercise intervention known as whole-body vibration (WBV) exercise has gained increasing interest. WBV exercise is generated due to the transmission of mechanical vibrations, produced by a vibrating platform, to the body. The aim of this review was to summarize studies in experimental animal models using WBV exercise in wound healing. Searches were performed in EMBASE, PubMed, Scopus and Web of Science including publications on 21 November 2022 using the string "whole body vibration" AND "wound healing" (animal or mice or mouse or rat or rodent). The SYRCLE tool was used to assess the risk of bias (RoB). From 48 studies, five studies met the inclusion criteria. RoB indicated that none of the studies fulfilled all methodological analyzed criteria, resulting in possible biases. The studies were homogeneous, and results suggest beneficial effects of WBV exercise in wound healing, mainly related to enhancing angiogenesis, granulation tissue formation, reducing the blood glucose level and enhancing blood microcirculation, by increasing myofiber growth and rapid re-epithelialization. In conclusion, the various biological effects of the response to the WBV exercise indicate the relevance of this intervention in wound healing in animals. Moreover, considering the translation approach, it is possible to speculate that the beneficial effects of this non-pharmacological therapy might justify clinical trials for wound healing also in humans, after criterion evaluation.


Assuntos
Condicionamento Físico Animal , Vibração , Humanos , Camundongos , Ratos , Animais , Vibração/uso terapêutico , Terapia por Exercício/métodos , Cicatrização , Condicionamento Físico Animal/fisiologia
7.
Children (Basel) ; 10(2)2023 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-36832342

RESUMO

BACKGROUND: The health and developmental issues of people with Down syndrome (DS) are complex and are associated with many medical, psychological, and social problems from childhood through into adulthood. DS children have an increased risk of multiorgan comorbidities, including congenital heart disease. Atrioventricular septal defect (AVSD) is a congenital heart malformation that often occurs in DS people. AIM: Physical activity and exercise are recommended for patients with cardiovascular disease and are considered to be the gold standard of cardiac rehabilitation. Whole-body vibration exercise (WBVE) is considered a form of exercises. The aim of this case report is to show the effects of WBVE on sleep disturbances, body temperature, body composition, tone, and clinical parameters in a child with DS with corrected total AVSD. The subject is a 10-year-old girl, with free-type DS, who underwent surgery to correct a total AVSD at 6 months. She underwent periodic cardiological monitoring and was released to perform any type of physical exercise, including WBVE. WBVE improved sleep quality and body composition. CONCLUSION: WBVE leads to physiological effects that benefit the DS child.

10.
ACS Catal ; 12(9): 5022-5035, 2022 May 06.
Artigo em Inglês | MEDLINE | ID: mdl-36567772

RESUMO

Laccases are in increasing demand as innovative solutions in the biorefinery fields. Here, we combine mutagenesis with structural, kinetic, and in silico analyses to characterize the molecular features that cause the evolution of a hyperthermostable metallo-oxidase from the multicopper oxidase family into a laccase (k cat 273 s-1 for a bulky aromatic substrate). We show that six mutations scattered across the enzyme collectively modulate dynamics to improve the binding and catalysis of a bulky aromatic substrate. The replacement of residues during the early stages of evolution is a stepping stone for altering the shape and size of substrate-binding sites. Binding sites are then fine-tuned through high-order epistasis interactions by inserting distal mutations during later stages of evolution. Allosterically coupled, long-range dynamic networks favor catalytically competent conformational states that are more suitable for recognizing and stabilizing the aromatic substrate. This work provides mechanistic insight into enzymatic and evolutionary molecular mechanisms and spots the importance of iterative experimental and computational analyses to understand local-to-global changes.

11.
Front Med (Lausanne) ; 9: 959769, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36213662

RESUMO

Purpose: COVID-19 infection has been associated with a high risk of complications and death among patients with acute coronary syndrome (ACS). However, there is little information on the simultaneous involvement in Latin American countries. Methods: In the period between May 2020 and February 2021, an observational, longitudinal, prospective cohort study with two parallel branches was conducted in private and public hospitals in Brasilia, Brazil, including patients with ACS with and without a positive SARS-CoV-2 test result during hospitalization. Results: A total of 149 patients with ACS were included (75 with COVID-19 and 74 controls). Patients with COVID-19 exhibited an average of 62 years of age, 57% men, 40% diabetics, 67% hypertensive, 48% had an ACS with ST-segment elevation, Killip I was predominant, a low Syntax Score in 72%, with an average Grace Score of 117, and a length of hospitalization of 43 days in average. The control branch was similar in clinical characteristics, except for a lower proportion of ST-segment elevation ACS (16%, p < 0.01) and a higher incidence of arrhythmias (8 vs. 20 %, p = 0.03). Using the Cox regression method of analysis of covariates collected in the study, it was identified that patients with COVID-19 had a risk of death 2.34 times higher than patients without COVID-19 (p = 0.049). Conclusion: In this study conducted in a Latin American capital, SARS-CoV-2 infection predicted a higher chance of death in patients admitted with ACS, which is a finding that reinforces the need for greater care when diseases develop in overlapping ways.

12.
Comput Struct Biotechnol J ; 20: 3899-3910, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35950185

RESUMO

DyP-type peroxidases (DyPs) are microbial enzymes that catalyze the oxidation of a wide range of substrates, including synthetic dyes, lignin-derived compounds, and metals, such as Mn2+ and Fe2+, and have enormous biotechnological potential in biorefineries. However, many questions on the molecular basis of enzyme function and stability remain unanswered. In this work, high-resolution structures of PpDyP wild-type and two engineered variants (6E10 and 29E4) generated by directed evolution were obtained. The X-ray crystal structures revealed the typical ferredoxin-like folds, with three heme access pathways, two tunnels, and one cavity, limited by three long loops including catalytic residues. Variant 6E10 displays significantly increased loops' flexibility that favors function over stability: despite the considerably higher catalytic efficiency, this variant shows poorer protein stability compared to wild-type and 29E4 variants. Constant-pH MD simulations revealed a more positively charged microenvironment near the heme pocket of variant 6E10, particularly in the neutral to alkaline pH range. This microenvironment affects enzyme activity by modulating the pK a of essential residues in the heme vicinity and should account for variant 6E10 improved activity at pH 7-8 compared to the wild-type and 29E4 that show optimal enzymatic activity close to pH 4. Our findings shed light on the structure-function relationships of DyPs at the molecular level, including their pH-dependent conformational plasticity. These are essential for understanding and engineering the catalytic properties of DyPs for future biotechnological applications.

13.
Molecules ; 27(13)2022 Jul 02.
Artigo em Inglês | MEDLINE | ID: mdl-35807515

RESUMO

Endonuclease III (EndoIII) is a bifunctional DNA glycosylase with specificity for a broad range of oxidized DNA lesions. The genome of an extremely radiation- and desiccation-resistant bacterium, Deinococcus radiodurans, possesses three genes encoding for EndoIII-like enzymes (DrEndoIII1, DrEndoIII2 and DrEndoIII3), which reveal different types of catalytic activities. DrEndoIII2 acts as the main EndoIII in this organism, while DrEndoIII1 and 3 demonstrate unusual and no EndoIII activity, respectively. In order to understand the role of DrEndoIII1 and DrEndoIII3 in D. radiodurans, we have generated mutants which target non-conserved residues in positions considered essential for classic EndoIII activity. In parallel, we have substituted residues coordinating the iron atoms in the [4Fe-4S] cluster in DrEndoIII2, aiming at elucidating the role of the cluster in these enzymes. Our results demonstrate that the amino acid substitutions in DrEndoIII1 reduce the enzyme activity without altering the overall structure, revealing that the residues found in the wild-type enzyme are essential for its unusual activity. The attempt to generate catalytic activity of DrEndoIII3 by re-designing its catalytic pocket was unsuccessful. A mutation of the iron-coordinating cysteine 199 in DrEndoIII2 appears to compromise the structural integrity and induce the formation of a [3Fe-4S] cluster, but apparently without affecting the activity. Taken together, we provide important structural and mechanistic insights into the three EndoIIIs, which will help us disentangle the open questions related to their presence in D. radiodurans and their particularities.


Assuntos
Extremófilos , Proteínas Ferro-Enxofre , Endonucleases/metabolismo , Extremófilos/genética , Ferro/metabolismo , Proteínas Ferro-Enxofre/química , Proteínas Ferro-Enxofre/genética
14.
PLoS One ; 17(5): e0268223, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35536857

RESUMO

BACKGROUND: Established MRI and emerging X-ray contrast agents for non-invasive imaging of articular cartilage rely on non-selective electrostatic interactions with negatively charged proteoglycans. These contrast agents have limited prognostic utility in diseases such as osteoarthritis (OA) due to the characteristic high turnover of proteoglycans. To overcome this limitation, we developed a radiocontrast agent that targets the type II collagen macromolecule in cartilage and used it to monitor disease progression in a murine model of OA. METHODS: To confer radiopacity to cartilage contrast agents, the naturally occurring tyrosine derivative 3,5-diiodo-L-tyrosine (DIT) was introduced into a selective peptide for type II collagen. Synthetic DIT peptide derivatives were synthesised by Fmoc-based solid-phase peptide synthesis and binding to ex vivo mouse tibial cartilage evaluated by high-resolution micro-CT. Di-Iodotyrosinated Peptide Imaging of Cartilage (DIPIC) was performed ex vivo and in vivo 4, 8 and 12 weeks in mice after induction of OA by destabilisation of the medial meniscus (DMM). Finally, human osteochondral plugs were imaged ex vivo using DIPIC. RESULTS: Fifteen DIT peptides were synthesised and tested, yielding seven leads with varying cartilage binding strengths. DIPIC visualised ex vivo murine articular cartilage comparably to the ex vivo contrast agent phosphotungstic acid. Intra-articular injection of contrast agent followed by in vivo DIPIC enabled delineation of damaged murine articular cartilage. Finally, the translational potential of the contrast agent was confirmed by visualisation of ex vivo human cartilage explants. CONCLUSION: DIPIC has reduction and refinement implications in OA animal research and potential clinical translation to imaging human disease.


Assuntos
Cartilagem Articular , Osteoartrite , Animais , Cartilagem Articular/diagnóstico por imagem , Cartilagem Articular/metabolismo , Colágeno Tipo II/metabolismo , Meios de Contraste/metabolismo , Modelos Animais de Doenças , Camundongos , Osteoartrite/diagnóstico por imagem , Osteoartrite/metabolismo , Peptídeos/metabolismo , Proteoglicanas/metabolismo , Microtomografia por Raio-X/métodos
15.
Eur Heart J ; 43(19): 1864-1877, 2022 05 14.
Artigo em Inglês | MEDLINE | ID: mdl-35567557

RESUMO

AIMS: Inflammation is a key factor in atherosclerosis. The transcription factor interferon regulatory factor-5 (IRF5) drives macrophages towards a pro-inflammatory state. We investigated the role of IRF5 in human atherosclerosis and plaque stability. METHODS AND RESULTS: Bulk RNA sequencing from the Carotid Plaque Imaging Project biobank were used to mine associations between major macrophage associated genes and transcription factors and human symptomatic carotid disease. Immunohistochemistry, proximity extension assays, and Helios cytometry by time of flight (CyTOF) were used for validation. The effect of IRF5 deficiency on carotid plaque phenotype and rupture in ApoE-/- mice was studied in an inducible model of plaque rupture. Interferon regulatory factor-5 and ITGAX/CD11c were identified as the macrophage associated genes with the strongest associations with symptomatic carotid disease. Expression of IRF5 and ITGAX/CD11c correlated with the vulnerability index, pro-inflammatory plaque cytokine levels, necrotic core area, and with each other. Macrophages were the predominant CD11c-expressing immune cells in the plaque by CyTOF and immunohistochemistry. Interferon regulatory factor-5 immunopositive areas were predominantly found within CD11c+ areas with a predilection for the shoulder region, the area of the human plaque most prone to rupture. Accordingly, an inducible plaque rupture model of ApoE-/-Irf5-/- mice had significantly lower frequencies of carotid plaque ruptures, smaller necrotic cores, and less CD11c+ macrophages than their IRF5-competent counterparts. CONCLUSION: Using complementary evidence from data from human carotid endarterectomies and a murine model of inducible rupture of carotid artery plaque in IRF5-deficient mice, we demonstrate a mechanistic link between the pro-inflammatory transcription factor IRF5, macrophage phenotype, plaque inflammation, and its vulnerability to rupture.


Assuntos
Aterosclerose , Fatores Reguladores de Interferon , Macrófagos , Placa Aterosclerótica , Animais , Apolipoproteínas E/genética , Aterosclerose/metabolismo , Aterosclerose/patologia , Humanos , Inflamação/metabolismo , Fatores Reguladores de Interferon/metabolismo , Macrófagos/imunologia , Camundongos , Necrose , Placa Aterosclerótica/metabolismo , Placa Aterosclerótica/patologia
16.
Nat Commun ; 13(1): 140, 2022 01 10.
Artigo em Inglês | MEDLINE | ID: mdl-35013258

RESUMO

While mRNA vaccines are administrated worldwide in an effort to contain the COVID-19 pandemic, the heterogeneity of the humoral immune response they induce at the population scale remains unclear. Here, in a prospective, longitudinal, cohort-study, including 1245 hospital care workers and 146 nursing home residents scheduled for BNT162b2 vaccination, together covering adult ages from 19 to 99 years, we analyse seroconversion to SARS-CoV-2 spike protein and amount of spike-specific IgG, IgM and IgA before vaccination, and 3-5 weeks after each dose. We show that immunogenicity after a single vaccine dose is biased to IgG, heterogeneous and reduced with increasing age. The second vaccine dose normalizes IgG seroconversion in all age strata. These findings indicate two dose mRNA vaccines is required to reach population scale humoral immunity. The results advocate for the interval between the two doses not to be extended, and for serological monitoring of elderly and immunosuppressed vaccinees.


Assuntos
Anticorpos Antivirais/imunologia , Vacina BNT162/imunologia , COVID-19/imunologia , Imunização Secundária , SARS-CoV-2/imunologia , Adulto , Fatores Etários , Idoso , Idoso de 80 Anos ou mais , COVID-19/epidemiologia , COVID-19/prevenção & controle , Feminino , Humanos , Imunogenicidade da Vacina , Estudos Longitudinais , Masculino , Pessoa de Meia-Idade , Portugal/epidemiologia , Estudos Prospectivos , Soroconversão , Vacinação , Adulto Jovem
17.
Int J Mol Sci ; 22(19)2021 Oct 08.
Artigo em Inglês | MEDLINE | ID: mdl-34639208

RESUMO

Bacillus subtilis BsDyP belongs to class I of the dye-decolorizing peroxidase (DyP) family of enzymes and is an interesting biocatalyst due to its high redox potential, broad substrate spectrum and thermostability. This work reports the optimization of BsDyP using directed evolution for improved oxidation of 2,6-dimethoxyphenol, a model lignin-derived phenolic. After three rounds of evolution, one variant was identified displaying 7-fold higher catalytic rates and higher production yields as compared to the wild-type enzyme. The analysis of X-ray structures of the wild type and the evolved variant showed that the heme pocket is delimited by three long conserved loop regions and a small α helix where, incidentally, the mutations were inserted in the course of evolution. One loop in the proximal side of the heme pocket becomes more flexible in the evolved variant and the size of the active site cavity is increased, as well as the width of its mouth, resulting in an enhanced exposure of the heme to solvent. These conformational changes have a positive functional role in facilitating electron transfer from the substrate to the enzyme. However, they concomitantly resulted in decreasing the enzyme's overall stability by 2 kcal mol-1, indicating a trade-off between functionality and stability. Furthermore, the evolved variant exhibited slightly reduced thermal stability compared to the wild type. The obtained data indicate that understanding the role of loops close to the heme pocket in the catalysis and stability of DyPs is critical for the development of new and more powerful biocatalysts: loops can be modulated for tuning important DyP properties such as activity, specificity and stability.


Assuntos
Bacillus subtilis/enzimologia , Proteínas de Bactérias/metabolismo , Heme/química , Mutação , Peroxidase/química , Peroxidase/metabolismo , Proteínas de Bactérias/genética , Catálise , Domínio Catalítico , Corantes/química , Corantes/metabolismo , Estabilidade Enzimática , Heme/metabolismo , Concentração de Íons de Hidrogênio , Oxirredução , Peroxidase/genética , Conformação Proteica
18.
Front Med (Lausanne) ; 8: 796676, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-35004771

RESUMO

Background: Patients on hemodialysis (HD) are at higher risk for COVID-19, overall are poor responders to vaccines, and were prioritized in the Portuguese vaccination campaign. Objective: This work aimed at evaluating in HD patients the immunogenicity of BTN162b2 after the two doses induction phase, the persistence of specific antibodies along time, and factors predicting these outcomes. Methods: We performed a prospective, 6-month long longitudinal cohort analysis of 156 HD patients scheduled to receive BTN162b2. ELISA quantified anti-spike IgG, IgM, and IgA levels in sera were collected every 3 weeks during the induction phase (t0 before vaccine; t1, d21 post first dose; and t2 d21 post second dose), and every 3-4 months during the waning phase (t3, d140, and t4, d180 post first dose). The age-matched control cohort was similarly analyzed from t0 to t2. Results: Upon exclusion of participants identified as previously exposed to SARS-CoV-2, seroconversion at t1 was lower in patients than controls (29 and 50%, respectively, p = 0.0014), while the second vaccine dose served as a boost in both cohorts (91 and 95% positivity, respectively, at t2, p = 0.2463). Lower response in patients than controls at t1 was a singularity of the participants ≤ 70 years (p = 2.01 × 10-05), associated with immunosuppressive therapies (p = 0.013), but not with lack of responsiveness to hepatitis B. Anti-spike IgG, IgM, and IgA levels decreased at t3, with IgG levels further waning at t4 and resulting in >30% seronegativity. Anti-spike IgG levels at t1 and t4 were correlated (ρ = 0.65, p < 2.2 × 10-16). Conclusions: While most HD patients seroconvert upon 2 doses of BNT162b2 vaccination, anti-spike antibodies levels wane over the following 4 months, leading to early seroreversion in a sizeable fraction of the patients. These findings warrant close monitoring of COVID-19 infection in vaccinated HD patients, and advocate for further studies following reinforced vaccination schedules.

19.
Arq Gastroenterol ; 57(4): 471-476, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33331479

RESUMO

BACKGROUND: Nonalcoholic fatty liver disease (NAFLD) is one of the most common forms of chronic liver disease worldwide. Approximately 20% of individuals with NAFLD develop nonalcoholic steatohepatitis (NASH), which is associated with increased risk of cirrhosis, portal hypertension, and hepatocellular carcinoma. Intestinal microflora, including small intestinal bacterial overgrowth (SIBO), appear to play an important role in the pathogenesis of the disease, as demonstrated in several clinical and experimental studies, by altering intestinal permeability and allowing bacterial endotoxins to enter the circulation. OBJECTIVE: To determine the relationship between SIBO and endotoxin serum levels with clinical, laboratory, and histopathological aspects of NAFLD and the relationship between SIBO and endotoxin serum levels before and after antibiotic therapy. METHODS: Adult patients with a histological diagnosis of NAFLD, without cirrhosis were included. A comprehensive biochemistry panel, lactulose breath test (for diagnosis of SIBO), and serum endotoxin measurement (chromogenic LAL assay) were performed. SIBO was treated with metronidazole 250 mg q8h for 10 days and refractory cases were given ciprofloxacin 500 mg q12h for 10 days. RESULTS: Overall, 42 patients with a histopathological diagnosis of NAFLD were examined. The prevalence of SIBO was 26.2%. Comparison of demographic and biochemical parameters between patients with SIBO and those without SIBO revealed no statistically significant differences, except for use of proton pump inhibitors, which was significantly more frequent in patients with positive breath testing. The presence of SIBO was also associated with greater severity of hepatocellular ballooning on liver biopsy. Although the sample, as a whole, have elevated circulating endotoxin levels, we found no significant differences in this parameter between the groups with and without SIBO. Endotoxin values before and after antibiotic treatment did not differ, even on paired analysis, suggesting absence of any relationship between these factors. Serum endotoxin levels were inversely correlated with HDL levels, and directly correlated with triglyceride levels. CONCLUSION: Serum endotoxin levels did not differ between patients with and without SIBO, nor did these levels change after antibacterial therapy, virtually ruling out the possibility that elevated endotoxinemia in non-cirrhotic patients with NAFLD is associated with SIBO. Presence of SIBO was associated with greater severity of ballooning degeneration on liver biopsy, but not with a significantly higher prevalence of NASH. Additional studies are needed to evaluate the reproducibility and importance of this finding in patients with NAFLD and SIBO.


Assuntos
Hepatopatia Gordurosa não Alcoólica , Adulto , Endotoxinas , Humanos , Intestino Delgado , Cirrose Hepática , Neoplasias Hepáticas , Hepatopatia Gordurosa não Alcoólica/complicações , Reprodutibilidade dos Testes
20.
Arq. gastroenterol ; 57(4): 471-476, Oct.-Dec. 2020. tab
Artigo em Inglês | LILACS | ID: biblio-1142349

RESUMO

ABSTRACT BACKGROUND: Nonalcoholic fatty liver disease (NAFLD) is one of the most common forms of chronic liver disease worldwide. Approximately 20% of individuals with NAFLD develop nonalcoholic steatohepatitis (NASH), which is associated with increased risk of cirrhosis, portal hypertension, and hepatocellular carcinoma. Intestinal microflora, including small intestinal bacterial overgrowth (SIBO), appear to play an important role in the pathogenesis of the disease, as demonstrated in several clinical and experimental studies, by altering intestinal permeability and allowing bacterial endotoxins to enter the circulation. OBJECTIVE: To determine the relationship between SIBO and endotoxin serum levels with clinical, laboratory, and histopathological aspects of NAFLD and the relationship between SIBO and endotoxin serum levels before and after antibiotic therapy. METHODS: Adult patients with a histological diagnosis of NAFLD, without cirrhosis were included. A comprehensive biochemistry panel, lactulose breath test (for diagnosis of SIBO), and serum endotoxin measurement (chromogenic LAL assay) were performed. SIBO was treated with metronidazole 250 mg q8h for 10 days and refractory cases were given ciprofloxacin 500 mg q12h for 10 days. RESULTS: Overall, 42 patients with a histopathological diagnosis of NAFLD were examined. The prevalence of SIBO was 26.2%. Comparison of demographic and biochemical parameters between patients with SIBO and those without SIBO revealed no statistically significant differences, except for use of proton pump inhibitors, which was significantly more frequent in patients with positive breath testing. The presence of SIBO was also associated with greater severity of hepatocellular ballooning on liver biopsy. Although the sample, as a whole, have elevated circulating endotoxin levels, we found no significant differences in this parameter between the groups with and without SIBO. Endotoxin values before and after antibiotic treatment did not differ, even on paired analysis, suggesting absence of any relationship between these factors. Serum endotoxin levels were inversely correlated with HDL levels, and directly correlated with triglyceride levels. CONCLUSION: Serum endotoxin levels did not differ between patients with and without SIBO, nor did these levels change after antibacterial therapy, virtually ruling out the possibility that elevated endotoxinemia in non-cirrhotic patients with NAFLD is associated with SIBO. Presence of SIBO was associated with greater severity of ballooning degeneration on liver biopsy, but not with a significantly higher prevalence of NASH. Additional studies are needed to evaluate the reproducibility and importance of this finding in patients with NAFLD and SIBO.


RESUMO CONTEXTO: A doença hepática gordurosa não alcoólica (DHGNA) é uma das doenças hepáticas crônicas mais comuns em todo o mundo. Aproximadamente 20% dos indivíduos com DHGNA desenvolvem esteato-hepatite não alcoólica (EHNA) que está associada a maior risco de cirrose, hipertensão portal e/ou carcinoma hepatocelular. Alterações da microflora intestinal, incluindo o supercrescimento bacteriano intestinal (SBI), parecem ter um papel importante na patogênese da doença, como demonstrado em estudos clínicos e experimentais, pela alteração da permeabilidade intestinal e permitindo que endotoxinas bacterianas alcancem a circulação sanguínea. OBJETIVO: Determinar a relação entre o SBI e níveis de endotoxina sérica em pacientes não cirróticos com DHGNA, com os aspectos clínicos, laboratoriais e histopatológicos da doença e a relação entre SBI e níveis séricos de endotoxina antes e após tratamento com antibiótico. MÉTODOS: Foram incluídos pacientes maiores de 18 anos e com diagnóstico histológico de DHGNA, sem cirrose. Foram realizados: avaliação bioquímica geral, teste do H2 expirado com lactulose para diagnóstico de SBI e dosagem de endotoxina sérica - ensaio cromogênico para LAL. Para o tratamento do SBI utilizamos o metronidazol 250 mg de 8/8 horas por 10 dias e para os casos de retratamento foi utilizado ciprofloxacino 500 mg de 12/12 horas por 10 dias. RESULTADOS: Incluímos 42 pacientes com diagnóstico histopatológico de DHGNA. A prevalência de SBI foi de 26,2%. Quando comparamos o grupo dos pacientes com SBI com aquele sem SBI e analisamos suas variáveis demográficas e bioquímicas, não encontramos diferença estatisticamente significante entre elas, exceto pela utilização de inibidores de bomba de próton, que foi significantemente mais frequente nos pacientes com teste respiratório positivo. A presença de SBI também esteve associada à maior intensidade de balonização na biópsia hepática, quando comparados àqueles sem SBI. Embora o grupo como um todo apresentasse elevação dos níveis circulantes de endotoxinas, não pudemos encontrar diferenças estatísticas entre os grupos com e sem SBI. Os valores de endotoxinas pré e pós tratamento antibiótico não diferiram entre si, mesmo em análise pareada, sugerindo ausência de relação entre esses fatores. Os níveis de endotoxina sérica apresentaram correlação inversa com os níveis de HDL e correlação direta com os níveis de triglicerídeos. CONCLUSÃO: Níveis de endotoxinas séricas não diferiram entre os pacientes com e sem SBI, e que esses níveis não se modificaram após tratamento medicamentoso da proliferação bacteriana, praticamente excluindo a possibilidade de que os níveis elevados de endotoxemia estejam relacionados à SBI. A presença dessa proliferação bacteriana esteve associada à maior intensidade de balonização na biópsia hepática, mas não à maior prevalência de EHNA entre os portadores de SBI. Estudos complementares são necessários para avaliar a reprodutibilidade e a importância desse achado em portadores de DHGNA com SBI.


Assuntos
Humanos , Adulto , Hepatopatia Gordurosa não Alcoólica/complicações , Reprodutibilidade dos Testes , Endotoxinas , Intestino Delgado , Cirrose Hepática , Neoplasias Hepáticas
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